BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008E09LP1|AL425880
(837 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1550 0.0
>3x_Contig1663
Length = 13533
Score = 1550 bits (779), Expect = 0.0
Identities = 822/839 (97%), Gaps = 2/839 (0%)
Strand = Plus / Minus
Query: 1 gatcgaacagttttggattggcgccatctgcatataatttgattgaaccaggaaaaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 gatcgaacagttttggattggcgccatctgcatataatttgattgaaccaggaaaaagac 5905
Query: 61 cactatcttcttgcgtgcccnctattatcttaaatgagttgggattcccagacttggtgg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 cactatcttcttgcgtgcccactattatcttaaatgagttgggattcccagacttggtgg 5845
Query: 121 ttggggcctcaggaggttcccgtattagtccttcaattttgcaagttattgttagawagt 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct: 5844 ttggggcctcaggaggttcccgtattagtccttcaattttgcaagtaattgtaagaaagt 5785
Query: 181 tctggtatcaaatgccactattagaaacgattgcwtatccaagagtacatcatcagttat 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5784 actggtatcaaatgccactattagaaacgattgcatatccaagagtacatcatcagttat 5725
Query: 241 tgccggacattttagaggttgaaagctttccaatggtgggtaaagccttgatcgctgagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5724 tgccggacattttagaggttgaaagctttccaatggtgggtaaagccttgatcgctgagc 5665
Query: 301 tagtgaaaatgggtcatactcccaaggaaatgccttcaagatcggtggttaatgggattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 tagtgaaaatgggtcatactcccaaggaaatgccttcaagatcggtggttaatgggattt 5605
Query: 361 gtagagtcaatgcagagtggcatgctgttagtgattattggcgccaaaggggcattgctg 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5604 gtagagtcaatgcagagtggcatgctgttagtgattattggcgcaaaaggggcattgctg 5545
Query: 421 ccgcgatgtgagttaccagttggtccctgtttcctgatttttgcatgaacttttctctag 480
| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5544 cagcgatgtgagtaaccagttggtccctgtatcctgatttttgcatgaacttttctctag 5485
Query: 481 tatatatattwtttttcacagaataacgttcttgtattgttcatcgtattaatgttgcgg 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 tatatatataaattttcacagaataacgttcttgtattgttcatcgtattaatgttgcgg 5425
Query: 541 as--acccaagccaaacattttcccgctagtttgaaacgtcactgtcgtgcgtttagttt 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 agcaacccaagccaaacattttcccgctagtttgaaacgtcactgtcgtgcgtttagttt 5365
Query: 599 tgtcactatatcacgtgatcgggttttgttatttttctgttctttctgctccgctgttcg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 tgtcactatatcacgtgatcgggttttgttatttttctgttctttctgctccgctgttcg 5305
Query: 659 tgttcgcgaacttcgtgaaacatttgaatgtttcatgagagctttatttggatcaaaaat 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 tgttcgcgaacttcgtgaaacatttgaatgtttcatgagagctttatttggatcaaaaat 5245
Query: 719 ctgatctatttaaacacactagtgaatwaacgaagaacacgccaaaaaagtatcaaaaat 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5244 ctgatctatttaaacacactagtgaataaacgaagaacacgccaaaaaagtatcaaaaat 5185
Query: 779 agggatctttaatcttcaatcataaaaccatcatagaccatgagtgaaaaaaagcctct 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 agggatctttaatcttcaatcataaaaccatcatagaccatgagtgaaaaaaagcctct 5126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5765
Number of Sequences: 1807
Number of extensions: 5765
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 837
length of database: 10,358,551
effective HSP length: 16
effective length of query: 821
effective length of database: 10,329,639
effective search space: 8480633619
effective search space used: 8480633619
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)